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The total brightness of the object is not specified in units of flux, but in magnitudes. The magnitude scale is a relative measure of brightness. When a reference object has magnitude mr with flux Fr, then the magnitude of an object with a flux of F is calculated by:
m−mr=−2.5log10(FFr)
The zero-point magnitude (mz) is defined as the magnitude in which Fr=1. So when you specify the magnitude of your desired object in the --mcol of your input catalog, then it will have a total flux of:
log10F=mz−m2.5→F=10mz−m2.5
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GNU Astronomy Utilities manual, July 2015.