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As the generation of the Hypergammon databases are an iterative process it's not possible to give MD5 checksum for these, as it depend heavily on your convergence threshold, the number of restarts, and rounding errors.
A random position from the database is found in Random position from hypergammon database. The equities and percentages in your own database should be very similar (if not identical):
GNU Backgammon Position ID: ADAAAQAkIAAAAA
Random position from hypergammon database
GNU Backgammon Position ID: ADAAAQAkIAAAAA Match ID : cAkAAAAAAAAA +13-14-15-16-17-18------19-20-21-22-23-24-+ O: gnubg | X X | | X | 0 points | | | | | | | | | | | | | | | | v| |BAR| | (Cube: 1) | | | | | | | | | | | | | O | | | On roll | O | | O | 0 points +12-11-10--9--8--7-------6--5--4--3--2--1-+ X: jth Player Opponent Position 3018 2831 Owned cube : -0.0230 Centered cube : -0.2310 Centered cube (Jacoby rule) : -0.2186 Opponent owns cube : -0.3548 Win W(g) W(bg) L(g) L(bg) Equity (cubeful) static: 0.456 0.244 0.014 0.318 0.019 (-0.168 (-0.219)) No double : -0.219 Double, pass : +1.000 (+1.219) Double, take : -0.710 (-0.491) Correct cube action: No double, beaver